Build:
- 0
2025-02-19 07:37.36: New job: docker build {
"compose-or-build": true,
"commit": "16e2939ca0fc7c995c01a4b4bcf8eda9d3d43f6e",
"dockerfile": {
"file": "Dockerfile"
},
"docker_context": null,
"squash": false,
"build_args": [],
"path": null
}
2025-02-19 07:37.36: Checking out commit 16e2939c. To reproduce:
git clone --recursive "https://github.com/quantifyearth/tmf-implementation.git" -b "mwd-relax-install-requirements" && cd "tmf-implementation" && git reset --hard 16e2939c
2025-02-19 07:37.36: Exec: "cp" "-a" "--" "/var/lib/ocurrent/var/git/tmf-implementation.git-5332eb8f4e9a0e164ac8337c5fb9bb231623a1b49513d9e0b7e8093b59f0e60b/.git"
"/tmp/git-checkout1e8b1913"
2025-02-19 07:37.36: Exec: "git" "-C" "/tmp/git-checkout1e8b1913" "reset"
"--hard" "-q" "16e2939ca0fc7c995c01a4b4bcf8eda9d3d43f6e"
2025-02-19 07:37.36: Exec: "docker" "build" "--pull" "-f" "/tmp/git-checkout1e8b1913/Dockerfile"
"--iidfile" "/tmp/git-checkout1e8b1913/docker-iid"
"--" "/tmp/git-checkout1e8b1913"
DEPRECATED: The legacy builder is deprecated and will be removed in a future release.
Install the buildx component to build images with BuildKit:
https://docs.docker.com/go/buildx/
Sending build context to Docker daemon 3.275MB
Step 1/15 : FROM golang:bullseye AS littlejohn
bullseye: Pulling from library/golang
Digest: sha256:cf29cafe674ad5e637311148fb7933f67c4e8cafa79ce066aad0e7aa708fc287
Status: Image is up to date for golang:bullseye
---> 310589e8caee
Step 2/15 : RUN git clone https://github.com/carboncredits/littlejohn.git
---> Using cache
---> 52eff5b9ebbc
Step 3/15 : WORKDIR littlejohn
---> Using cache
---> 6de335ebeb49
Step 4/15 : RUN go build
---> Using cache
---> 371ea56e898e
Step 5/15 : FROM ghcr.io/osgeo/gdal:ubuntu-small-3.10.1
ubuntu-small-3.10.1: Pulling from osgeo/gdal
Digest: sha256:e8606061e83065fcf317bc6244a1ea11afa68891c5adccea8449e3501e6fa917
Status: Image is up to date for ghcr.io/osgeo/gdal:ubuntu-small-3.10.1
---> 3f8a21dfad2b
Step 6/15 : COPY --from=littlejohn /go/littlejohn/littlejohn /bin/littlejohn
---> Using cache
---> 5909d7783b4d
Step 7/15 : RUN apt-get update -qqy && apt-get install -qy git libpq-dev python3-pip && rm -rf /var/lib/apt/lists/* && rm -rf /var/cache/apt/*
---> Using cache
---> 6ca5b571d390
Step 8/15 : RUN pip config set global.break-system-packages true
---> Using cache
---> b8f9efc93318
Step 9/15 : RUN pip install gdal[numpy]==3.10.1
---> Running in 806fa9d150c1
Requirement already satisfied: gdal==3.10.1 in /usr/lib/python3/dist-packages (from gdal[numpy]==3.10.1) (3.10.1)
Requirement already satisfied: numpy>1.0.0 in /usr/lib/python3/dist-packages (from gdal[numpy]==3.10.1) (1.26.4)
WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
---> Removed intermediate container 806fa9d150c1
---> e187121080c9
Step 10/15 : WORKDIR /usr/src/app
---> Running in 800890baf95f
---> Removed intermediate container 800890baf95f
---> c3143b179050
Step 11/15 : COPY requirements.txt ./
---> f90607101102
Step 12/15 : RUN pip install --no-cache-dir -r requirements.txt
---> Running in d15280c2f201
Collecting git+https://github.com/quantifyearth/yirgacheffe@cc89b4d8a0e97c1a11b730cd688a58b680023336 (from -r requirements.txt (line 11))
Cloning https://github.com/quantifyearth/yirgacheffe (to revision cc89b4d8a0e97c1a11b730cd688a58b680023336) to /tmp/pip-req-build-eyzpo50l
Running command git clone --filter=blob:none --quiet https://github.com/quantifyearth/yirgacheffe /tmp/pip-req-build-eyzpo50l
Running command git rev-parse -q --verify 'sha^cc89b4d8a0e97c1a11b730cd688a58b680023336'
Running command git fetch -q https://github.com/quantifyearth/yirgacheffe cc89b4d8a0e97c1a11b730cd688a58b680023336
Running command git checkout -q cc89b4d8a0e97c1a11b730cd688a58b680023336
Resolved https://github.com/quantifyearth/yirgacheffe to commit cc89b4d8a0e97c1a11b730cd688a58b680023336
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'done'
Collecting git+https://github.com/carboncredits/biomass-recovery@9e54f80832a7eca915ebd13b03df9db2a08aee9d (from -r requirements.txt (line 12))
Cloning https://github.com/carboncredits/biomass-recovery (to revision 9e54f80832a7eca915ebd13b03df9db2a08aee9d) to /tmp/pip-req-build-qk_bcuci
Running command git clone --filter=blob:none --quiet https://github.com/carboncredits/biomass-recovery /tmp/pip-req-build-qk_bcuci
Running command git rev-parse -q --verify 'sha^9e54f80832a7eca915ebd13b03df9db2a08aee9d'
Running command git fetch -q https://github.com/carboncredits/biomass-recovery 9e54f80832a7eca915ebd13b03df9db2a08aee9d
Running command git checkout -q 9e54f80832a7eca915ebd13b03df9db2a08aee9d
Resolved https://github.com/carboncredits/biomass-recovery to commit 9e54f80832a7eca915ebd13b03df9db2a08aee9d
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Requirement already satisfied: numpy in /usr/lib/python3/dist-packages (from -r requirements.txt (line 1)) (1.26.4)
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Downloading numba-0.61.0-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.8 kB)
Collecting matplotlib (from -r requirements.txt (line 9))
Downloading matplotlib-3.10.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (11 kB)
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Collecting pytest (from -r requirements.txt (line 16))
Downloading pytest-8.3.4-py3-none-any.whl.metadata (7.5 kB)
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Collecting pandas-stubs (from -r requirements.txt (line 18))
Downloading pandas_stubs-2.2.3.241126-py3-none-any.whl.metadata (10.0 kB)
Collecting types-requests (from -r requirements.txt (line 19))
Downloading types_requests-2.32.0.20241016-py3-none-any.whl.metadata (1.9 kB)
Requirement already satisfied: gdal[numpy] in /usr/lib/python3/dist-packages (from -r requirements.txt (line 2)) (3.10.1)
Collecting charset-normalizer<4,>=2 (from requests->-r requirements.txt (line 3))
Downloading charset_normalizer-3.4.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB)
Collecting idna<4,>=2.5 (from requests->-r requirements.txt (line 3))
Downloading idna-3.10-py3-none-any.whl.metadata (10 kB)
Collecting urllib3<3,>=1.21.1 (from requests->-r requirements.txt (line 3))
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Collecting certifi>=2017.4.17 (from requests->-r requirements.txt (line 3))
Downloading certifi-2025.1.31-py3-none-any.whl.metadata (2.5 kB)
Collecting python-dateutil>=2.8.2 (from pandas->-r requirements.txt (line 4))
Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
Collecting pytz>=2020.1 (from pandas->-r requirements.txt (line 4))
Downloading pytz-2025.1-py2.py3-none-any.whl.metadata (22 kB)
Collecting tzdata>=2022.7 (from pandas->-r requirements.txt (line 4))
Downloading tzdata-2025.1-py2.py3-none-any.whl.metadata (1.4 kB)
Collecting pyogrio>=0.7.2 (from geopandas->-r requirements.txt (line 6))
Downloading pyogrio-0.10.0-cp312-cp312-manylinux_2_28_x86_64.whl.metadata (5.5 kB)
Collecting packaging (from geopandas->-r requirements.txt (line 6))
Downloading packaging-24.2-py3-none-any.whl.metadata (3.2 kB)
Collecting pyproj>=3.3.0 (from geopandas->-r requirements.txt (line 6))
Downloading pyproj-3.7.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (31 kB)
Collecting shapely>=2.0.0 (from geopandas->-r requirements.txt (line 6))
Downloading shapely-2.0.7-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.8 kB)
Collecting llvmlite<0.45,>=0.44.0dev0 (from numba->-r requirements.txt (line 8))
Downloading llvmlite-0.44.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.0 kB)
Collecting contourpy>=1.0.1 (from matplotlib->-r requirements.txt (line 9))
Downloading contourpy-1.3.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.4 kB)
Collecting cycler>=0.10 (from matplotlib->-r requirements.txt (line 9))
Downloading cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB)
Collecting fonttools>=4.22.0 (from matplotlib->-r requirements.txt (line 9))
Downloading fonttools-4.56.0-cp312-cp312-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (101 kB)
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Collecting kiwisolver>=1.3.1 (from matplotlib->-r requirements.txt (line 9))
Downloading kiwisolver-1.4.8-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.2 kB)
Requirement already satisfied: pillow>=8 in /usr/lib/python3/dist-packages (from matplotlib->-r requirements.txt (line 9)) (10.2.0)
Collecting pyparsing>=2.3.1 (from matplotlib->-r requirements.txt (line 9))
Downloading pyparsing-3.2.1-py3-none-any.whl.metadata (5.0 kB)
Collecting scikit-image (from yirgacheffe==0.8.4->-r requirements.txt (line 11))
Downloading scikit_image-0.25.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (14 kB)
Collecting geoalchemy2 (from biomassrecovery==0.0.3->-r requirements.txt (line 12))
Downloading GeoAlchemy2-0.17.1-py3-none-any.whl.metadata (2.3 kB)
Collecting h5py (from biomassrecovery==0.0.3->-r requirements.txt (line 12))
Downloading h5py-3.13.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB)
Collecting hvplot (from biomassrecovery==0.0.3->-r requirements.txt (line 12))
Downloading hvplot-0.11.2-py3-none-any.whl.metadata (15 kB)
Collecting psutil (from biomassrecovery==0.0.3->-r requirements.txt (line 12))
Downloading psutil-7.0.0-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (22 kB)
Collecting psycopg2 (from biomassrecovery==0.0.3->-r requirements.txt (line 12))
Downloading psycopg2-2.9.10.tar.gz (385 kB)
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Collecting pyarrow (from biomassrecovery==0.0.3->-r requirements.txt (line 12))
Downloading pyarrow-19.0.1-cp312-cp312-manylinux_2_28_x86_64.whl.metadata (3.3 kB)
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Downloading pylr2-0.1.0.tar.gz (4.2 kB)
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Collecting pyspark (from biomassrecovery==0.0.3->-r requirements.txt (line 12))
Downloading pyspark-3.5.4.tar.gz (317.3 MB)
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Downloading python_dotenv-1.0.1-py3-none-any.whl.metadata (23 kB)
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Downloading rioxarray-0.18.2-py3-none-any.whl.metadata (5.4 kB)
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Downloading SQLAlchemy-2.0.38-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.6 kB)
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Downloading statsmodels-0.14.4-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
Collecting tqdm (from biomassrecovery==0.0.3->-r requirements.txt (line 12))
Downloading tqdm-4.67.1-py3-none-any.whl.metadata (57 kB)
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Downloading utm-0.8.0.tar.gz (13 kB)
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Downloading xarray-2025.1.2-py3-none-any.whl.metadata (11 kB)
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INFO: This is taking longer than usual. You might need to provide the dependency resolver with stricter constraints to reduce runtime. See https://pip.pypa.io/warnings/backtracking for guidance. If you want to abort this run, press Ctrl + C.
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Downloading greenlet-3.1.1-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.8 kB)
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Building wheels for collected packages: yirgacheffe, biomassrecovery, psycopg2, pylr2, pyspark, utm
Building wheel for yirgacheffe (pyproject.toml): started
Building wheel for yirgacheffe (pyproject.toml): finished with status 'done'
Created wheel for yirgacheffe: filename=yirgacheffe-0.8.4-py3-none-any.whl size=33694 sha256=a91ad0ebc7c29837d77c221f49ef4120a3a73296fd959ab6918ecae5200f6d88
Stored in directory: /tmp/pip-ephem-wheel-cache-b19v5twq/wheels/27/28/fe/818c30f270bb609754de48242650d046beed480f6e240be44f
Building wheel for biomassrecovery (setup.py): started
Building wheel for biomassrecovery (setup.py): finished with status 'done'
Created wheel for biomassrecovery: filename=biomassrecovery-0.0.3-py3-none-any.whl size=41351 sha256=202298b3442d1cf089f5d399c628f69e229f43c4382b52c4494c0bca6b6ea45e
Stored in directory: /tmp/pip-ephem-wheel-cache-b19v5twq/wheels/21/d8/18/6abbf1532e10218addf8e3912c58d4b74d482ef1d3c7e945ec
Building wheel for psycopg2 (setup.py): started
Building wheel for psycopg2 (setup.py): finished with status 'done'
Created wheel for psycopg2: filename=psycopg2-2.9.10-cp312-cp312-linux_x86_64.whl size=529497 sha256=c3d4721caa675b9745df5061a8b47622856190c1faea1cf96a91860f1dae6cb0
Stored in directory: /tmp/pip-ephem-wheel-cache-b19v5twq/wheels/ac/bb/ce/afa589c50b6004d3a06fc691e71bd09c9bd5f01e5921e5329b
Building wheel for pylr2 (setup.py): started
Building wheel for pylr2 (setup.py): finished with status 'done'
Created wheel for pylr2: filename=pylr2-0.1.0-py3-none-any.whl size=4745 sha256=538c0ebfb16b717e27453edbb3b0a0b3816602be66e96af8461fcd33c9fa6c0b
Stored in directory: /tmp/pip-ephem-wheel-cache-b19v5twq/wheels/ac/3e/d7/bafb7cd98c7e07bc34e40410e78e4fb1cb74317b90733437a4
Building wheel for pyspark (setup.py): started
Building wheel for pyspark (setup.py): finished with status 'done'
Created wheel for pyspark: filename=pyspark-3.5.4-py2.py3-none-any.whl size=317849766 sha256=2bdf18398c5474f862440a297eb64ca5611db239e427a78eb142196f6557a32a
Stored in directory: /tmp/pip-ephem-wheel-cache-b19v5twq/wheels/13/92/64/da92a3521323cc629fdf25dd56eb26938e08014c1b57ad3759
Building wheel for utm (setup.py): started
Building wheel for utm (setup.py): finished with status 'done'
Created wheel for utm: filename=utm-0.8.0-py3-none-any.whl size=8537 sha256=9dd45a271ee25152b7c4f838ee7b603963aea1738125224ec20f21d090b965d3
Stored in directory: /tmp/pip-ephem-wheel-cache-b19v5twq/wheels/14/aa/2d/295f40b78cb1fe6a32865b31f5965d0a481dca421d273e0513
Successfully built yirgacheffe biomassrecovery psycopg2 pylr2 pyspark utm
Installing collected packages: webencodings, utm, types-urllib3, pytz, py4j, xyzservices, urllib3, uc-micro-py, tzdata, typing_extensions, types-requests, types-pytz, tqdm, tornado, tomlkit, tifffile, six, shapely, scipy, PyYAML, python-dotenv, pyspark, pyparsing, pyarrow, psycopg2, psutil, polars, pluggy, platformdirs, patsy, param, packaging, networkx, mypy_extensions, mdurl, mccabe, MarkupSafe, markdown, llvmlite, kiwisolver, isort, iniconfig, imageio, idna, h5py, greenlet, geojson, fonttools, dill, cycler, contourpy, colorcet, click, charset-normalizer, certifi, bleach, attrs, astroid, affine, sqlalchemy, requests, pyviz-comms, python-dateutil, pytest, pyproj, pyogrio, pylint, pandas-stubs, numba, mypy, markdown-it-py, linkify-it-py, lazy-loader, Jinja2, cligj, click-plugins, scikit-image, rasterio, pandas, mdit-py-plugins, matplotlib, geoalchemy2, yirgacheffe, xarray, statsmodels, geopandas, bokeh, rioxarray, pylr2, panel, holoviews, hvplot, biomassrecovery
Successfully installed Jinja2-3.1.5 MarkupSafe-3.0.2 PyYAML-6.0.2 affine-2.4.0 astroid-3.3.8 attrs-25.1.0 biomassrecovery-0.0.3 bleach-6.2.0 bokeh-3.6.3 certifi-2025.1.31 charset-normalizer-3.4.1 click-8.1.8 click-plugins-1.1.1 cligj-0.7.2 colorcet-3.1.0 contourpy-1.3.1 cycler-0.12.1 dill-0.3.9 fonttools-4.56.0 geoalchemy2-0.17.1 geojson-3.2.0 geopandas-1.0.1 greenlet-3.1.1 h5py-3.13.0 holoviews-1.20.0 hvplot-0.11.2 idna-3.10 imageio-2.37.0 iniconfig-2.0.0 isort-6.0.0 kiwisolver-1.4.8 lazy-loader-0.4 linkify-it-py-2.0.3 llvmlite-0.44.0 markdown-3.7 markdown-it-py-3.0.0 matplotlib-3.10.0 mccabe-0.7.0 mdit-py-plugins-0.4.2 mdurl-0.1.2 mypy-1.15.0 mypy_extensions-1.0.0 networkx-3.4.2 numba-0.61.0 packaging-24.2 pandas-2.2.3 pandas-stubs-2.2.3.241126 panel-1.6.1 param-2.2.0 patsy-1.0.1 platformdirs-4.3.6 pluggy-1.5.0 polars-1.22.0 psutil-7.0.0 psycopg2-2.9.10 py4j-0.10.9.7 pyarrow-19.0.1 pylint-3.3.4 pylr2-0.1.0 pyogrio-0.10.0 pyparsing-3.2.1 pyproj-3.7.1 pyspark-3.5.4 pytest-8.3.4 python-dateutil-2.9.0.post0 python-dotenv-1.0.1 pytz-2025.1 pyviz-comms-3.0.4 rasterio-1.4.3 requests-2.32.3 rioxarray-0.18.2 scikit-image-0.25.2 scipy-1.15.2 shapely-2.0.7 six-1.17.0 sqlalchemy-2.0.38 statsmodels-0.14.4 tifffile-2025.2.18 tomlkit-0.13.2 tornado-6.4.2 tqdm-4.67.1 types-pytz-2025.1.0.20250204 types-requests-2.31.0.6 types-urllib3-1.26.25.14 typing_extensions-4.12.2 tzdata-2025.1 uc-micro-py-1.0.3 urllib3-1.26.20 utm-0.8.0 webencodings-0.5.1 xarray-2025.1.2 xyzservices-2025.1.0 yirgacheffe-0.8.4
WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
---> Removed intermediate container d15280c2f201
---> 335920871899
Step 13/15 : COPY . ./
---> bc4cc1480795
Step 14/15 : RUN make lint && make type && make test
---> Running in 7f8bafa3d18d
python -m pylint methods
------------------------------------
Your code has been rated at 10.00/10
python -m pylint test
------------------------------------
Your code has been rated at 10.00/10
python -m mypy methods
methods/utils/dranged_tree.py:20: error: Exception must be derived from BaseException; did you mean "NotImplementedError"? [misc]
methods/utils/dranged_tree.py:26: error: Exception must be derived from BaseException; did you mean "NotImplementedError"? [misc]
Found 2 errors in 1 file (checked 40 source files)
make: *** [Makefile:7: type] Error 1
The command '/bin/sh -c make lint && make type && make test' returned a non-zero code: 2
2025-02-19 07:43.48: Job failed: Docker build exited with status 2